Somite AI
Staff Machine Learning Researcher - Biological Foundational Models
Somite AI, Boston, Massachusetts, us, 02298
Staff Machine Learning Researcher - Biological Foundational Models
Join to apply for the
Staff Machine Learning Researcher - Biological Foundational Models
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Somite AI Staff Machine Learning Researcher - Biological Foundational Models
2 days ago Be among the first 25 applicants Join to apply for the
Staff Machine Learning Researcher - Biological Foundational Models
role at
Somite AI About Somite.ai
About Somite.ai
Somite.ai
is a venture-backed company transforming stem cell biology with AI. Just as LLMs revolutionized human language, we’re decoding the language of cells—how they communicate and decide their fate—using vast amounts of in-house generated data. Our AI models enable precise control over cell behavior, unlocking the potential to engineer therapies for diseases like diabetes, neurodegenerative diseases, and muscular dystrophies. Our platform,
DeltaStem , accelerates therapy creation and continually improves through data-driven insights.
Founded by
Dr. Micha Breakstone , a serial AI entrepreneur from MIT, and three Harvard Medical School professors, including the Chair of Genetics, Somite.ai is at the forefront of a new era in healthcare.
Location:
Boston
Click The Following Links To Learn More About Somite
https://x.com/SomiteAi/status/1922284999891472808
https://www.forbes.com/sites/gilpress/2025/05/13/somite-ai-raises-47m-series-a-to-reinvent-cell-replacement-therapy/
Click The Following Link To Apply
https://jobs.ashbyhq.com/somite-ai?utm_source=0pRNP5YXRZ
About The Role
As a Senior Machine Learning Researcher - Biological Foundational Models, you will play a key role in developing foundational models for single-cell RNA sequencing data. Working closely with other machine learning researchers and computational biologists, you’ll design cutting-edge AI solutions, contribute to pioneering research, and help build the core infrastructure driving Somite’s cell-replacement therapy platform. This role is ideal for a machine learning expert driven by scientific inquiry and eager to pioneer biological discoveries through foundational AI models.
Responsibilities
Design, train, and optimize foundational models for single-cell RNA sequencing and other high-dimensional omics data Collaborate closely with computational biologists to ensure models produce biologically meaningful, interpretable outputs, engaging deeply with biological questions and research Design and implement novel deep learning architectures, including transformer-based models tailored to biological data Build scalable, distributed pipelines for training and inference across trillion-token biological datasets Provide mentorship and technical guidance to other machine learning researchers on the team
Qualifications
6+ years of experience in machine learning, transformer-based deep learning, and large-scale data analysis, preferably in biological applications. Master’s degree or higher in Computer Science, Artificial Intelligence, Computational Biology, or a related field. Strong proficiency in Python and deep learning frameworks such as PyTorch or TensorFlow. Proven experience building and optimizing large-scale models, including transformer-based architectures. Demonstrated track record of independent research and end-to-end model development, from prototyping to production. Passion for AI-driven biology and its potential to transform healthcare.
Preferred Qualifications
Strongly preferred: PhD with a strong publication record in top machine learning and/or computational biology journals Strongly preferred: extensive background in biological research and biological modeling, ideally with single-cell RNA sequencing data Experience with reinforcement learning (e.g., RLHF, PPO), diffusion models, or multi-modal architectures applied to structured, high-dimensional data. Experience in startups or fast-paced environments, with a self-directed, proactive work style.
Somite’s Core Values
We show up – fully accountable, all-in, doing whatever it takes We act with urgency – swift, decisive, proactive We support one another – collaborative, helpful, empathetic
Benefits
Take a technical leadership role with a mission-driven company with the potential to significantly impact the lives of millions. Work alongside a talented and passionate team at the forefront of AI and cellular biology. Contribute to the development of groundbreaking therapies that address significant unmet medical needs. Enjoy a competitive salary and benefits package, including flexible work options.
Exceptional candidates who demonstrate outstanding capabilities and potential will be considered, even if they do not meet every qualification listed.
Join and help us unlock the full potential of AI for the benefit of human health! Seniority level
Seniority level Mid-Senior level Employment type
Employment type Full-time Job function
Job function Other Referrals increase your chances of interviewing at Somite AI by 2x Get notified about new Machine Learning Researcher jobs in
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Join to apply for the
Staff Machine Learning Researcher - Biological Foundational Models
role at
Somite AI Staff Machine Learning Researcher - Biological Foundational Models
2 days ago Be among the first 25 applicants Join to apply for the
Staff Machine Learning Researcher - Biological Foundational Models
role at
Somite AI About Somite.ai
About Somite.ai
Somite.ai
is a venture-backed company transforming stem cell biology with AI. Just as LLMs revolutionized human language, we’re decoding the language of cells—how they communicate and decide their fate—using vast amounts of in-house generated data. Our AI models enable precise control over cell behavior, unlocking the potential to engineer therapies for diseases like diabetes, neurodegenerative diseases, and muscular dystrophies. Our platform,
DeltaStem , accelerates therapy creation and continually improves through data-driven insights.
Founded by
Dr. Micha Breakstone , a serial AI entrepreneur from MIT, and three Harvard Medical School professors, including the Chair of Genetics, Somite.ai is at the forefront of a new era in healthcare.
Location:
Boston
Click The Following Links To Learn More About Somite
https://x.com/SomiteAi/status/1922284999891472808
https://www.forbes.com/sites/gilpress/2025/05/13/somite-ai-raises-47m-series-a-to-reinvent-cell-replacement-therapy/
Click The Following Link To Apply
https://jobs.ashbyhq.com/somite-ai?utm_source=0pRNP5YXRZ
About The Role
As a Senior Machine Learning Researcher - Biological Foundational Models, you will play a key role in developing foundational models for single-cell RNA sequencing data. Working closely with other machine learning researchers and computational biologists, you’ll design cutting-edge AI solutions, contribute to pioneering research, and help build the core infrastructure driving Somite’s cell-replacement therapy platform. This role is ideal for a machine learning expert driven by scientific inquiry and eager to pioneer biological discoveries through foundational AI models.
Responsibilities
Design, train, and optimize foundational models for single-cell RNA sequencing and other high-dimensional omics data Collaborate closely with computational biologists to ensure models produce biologically meaningful, interpretable outputs, engaging deeply with biological questions and research Design and implement novel deep learning architectures, including transformer-based models tailored to biological data Build scalable, distributed pipelines for training and inference across trillion-token biological datasets Provide mentorship and technical guidance to other machine learning researchers on the team
Qualifications
6+ years of experience in machine learning, transformer-based deep learning, and large-scale data analysis, preferably in biological applications. Master’s degree or higher in Computer Science, Artificial Intelligence, Computational Biology, or a related field. Strong proficiency in Python and deep learning frameworks such as PyTorch or TensorFlow. Proven experience building and optimizing large-scale models, including transformer-based architectures. Demonstrated track record of independent research and end-to-end model development, from prototyping to production. Passion for AI-driven biology and its potential to transform healthcare.
Preferred Qualifications
Strongly preferred: PhD with a strong publication record in top machine learning and/or computational biology journals Strongly preferred: extensive background in biological research and biological modeling, ideally with single-cell RNA sequencing data Experience with reinforcement learning (e.g., RLHF, PPO), diffusion models, or multi-modal architectures applied to structured, high-dimensional data. Experience in startups or fast-paced environments, with a self-directed, proactive work style.
Somite’s Core Values
We show up – fully accountable, all-in, doing whatever it takes We act with urgency – swift, decisive, proactive We support one another – collaborative, helpful, empathetic
Benefits
Take a technical leadership role with a mission-driven company with the potential to significantly impact the lives of millions. Work alongside a talented and passionate team at the forefront of AI and cellular biology. Contribute to the development of groundbreaking therapies that address significant unmet medical needs. Enjoy a competitive salary and benefits package, including flexible work options.
Exceptional candidates who demonstrate outstanding capabilities and potential will be considered, even if they do not meet every qualification listed.
Join and help us unlock the full potential of AI for the benefit of human health! Seniority level
Seniority level Mid-Senior level Employment type
Employment type Full-time Job function
Job function Other Referrals increase your chances of interviewing at Somite AI by 2x Get notified about new Machine Learning Researcher jobs in
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Distinguished Research Scientist, Physics Informed AI
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Computational Chemist | DFT | Density Functional Theory | Molecular Dynamics | Machine Learning | Hybrid, Boston
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Boston, MA $140,000.00-$200,000.00 2 days ago We’re unlocking community knowledge in a new way. Experts add insights directly into each article, started with the help of AI.
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