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Deep Origin

Senior Machine Learning Engineer

Deep Origin, Poland, New York, United States

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Deep Origin

is a biotechnology company accelerating drug discovery through AI‑powered tools. Our platforms simplify R&D, simulate biology, and empower scientists to solve diseases and extend healthspan.

We are looking for a Senior ML Engineer with experience in creating predictive models, particularly in the biology space. You will help create ML‑based representations of specific biological systems, tune and optimize larger composite models, and work with the Cellular Simulations team to incorporate biological simulations and mechanistic insights into the ML‑based approaches.

Requirements

B.S. or M.S. in a relevant quantitative field (Computer Science, Math, Physics, etc.)

At least 5 years of experience in the development of machine learning models in an industry setting

Knowledge of optimization methodologies for machine learning models

Extensive coding experience, preferably Python; other language proficiency considered

Fluent English for collaboration with an international team.

Nice to have

Ph.D. in relevant field

Deep experience in biological modeling and simulation, especially in systems biology or molecular‑level context

Experience with ML tasks involving small datasets

Experience in optimization of "composite models" – connected models that share output/input

Responsibilities

Construct ML‑based representations of biological systems, focusing on signaling pathway dynamics in cells.

Help create a hybrid multiscale biological simulator, incorporating ML components for effective model calibration and simulation.

Plan and organize work to ensure specific deadlines and milestones are met, coordinating with others.

Communicate effectively within the company and external teams, updating progress and bottlenecks regularly.

Seniority level Mid‑Senior level

Employment type Full‑time

Job function Other

Industries IT Services and IT Consulting

Warsaw, Mazowieckie, Poland

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