Columbia University Irving Medical Center
Sr Prgmr Analyst/Bioinformatic
Columbia University Irving Medical Center, New York, New York, us, 10261
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Sr Prgmr Analyst/Bioinformatic
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Columbia University Irving Medical Center Join to apply for the
Sr Prgmr Analyst/Bioinformatic
role at
Columbia University Irving Medical Center Grade 105
The Center for Infection and Immunity at Columbia University Irving Medical Center (CUIMC) and the Mailman School of Public Health is hiring for the position of Sr. Programmer Analyst, in Bioinformatics, to join one of the world’s largest and most advanced center for basic and translational science, with a global network of researchers, focused on microbial surveillance, discovery and diagnosis in humans and wildlife. The successful candidate will be part of a team that works on development and maintenance of pipelines for New York State CLIA certification of microbial diagnostic assays, high throughput serology, microbiome analysis, large-scale studies on autism and chronic fatigue syndrome/myalgic encephalomyelitis with focus on understanding host response mechanisms using high-throughput protein arrays, RNA-Seq, proteomics and metabolomics platforms, and data integration of multi-omics platforms.
The candidate is expected to demonstrate the following skills and experience:
Advanced knowledge of commonly used bioinformatics tools and algorithms, writing pipelines for analysis of NGS datasets, generated using Illumina sequencing platform, along with strong programming and analytical skills. Thorough knowledge of NGS experimental design, data quality control, mapping software such as Bowtie and STAR, genome annotations from major bioinformatics resources (EMBL, NCBI). Count generation using featureCounts, normalization and downstream analysis with DESeq2. Experience with tools such as Salmon, Kallisto etc. would be considered a plus. High proficiency in scripting languages, such as Shell, Python, Perl and R in an academic or industrial environment. Ability to work in Linux environments consisting of high-performance clusters or Amazon Cloud. Familiarity with SGE or Slurm schedulers, resource management, multi-threading tools. Familiarity with Gene Set Enrichment Analysis or Ingenuity Pathway analysis
Responsibilities
Provide bioinformatics support for multi-omics analysis in a large and dynamic laboratory - 50% Provide support for projects related to microbial detection and discovery - 30% Manage databases and data - 10% Contribute to publications and research grants - 5% Perform other related duties as assigned - 5%
Minimum Qualifications
Bachelor's degree in computer science, bioinformatics, related field or equivalent in training and education with at least four (4) years of related experience.
Preferred Qualifications
Master’s degree or PhD degree in computer science, bioinformatics, or related field with at least 2 years of related experience. Knowledge of statistical and machine learning techniques is a plus.
Equal Opportunity Employer / Disability / Veteran
Columbia University is commited to the hiring of qualified local residents. Seniority level
Seniority level Mid-Senior level Employment type
Employment type Full-time Job function
Job function Research, Analyst, and Information Technology Industries Hospitals and Health Care Referrals increase your chances of interviewing at Columbia University Irving Medical Center by 2x Get notified about new Senior Biologist jobs in
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Sr Prgmr Analyst/Bioinformatic
role at
Columbia University Irving Medical Center Join to apply for the
Sr Prgmr Analyst/Bioinformatic
role at
Columbia University Irving Medical Center Grade 105
The Center for Infection and Immunity at Columbia University Irving Medical Center (CUIMC) and the Mailman School of Public Health is hiring for the position of Sr. Programmer Analyst, in Bioinformatics, to join one of the world’s largest and most advanced center for basic and translational science, with a global network of researchers, focused on microbial surveillance, discovery and diagnosis in humans and wildlife. The successful candidate will be part of a team that works on development and maintenance of pipelines for New York State CLIA certification of microbial diagnostic assays, high throughput serology, microbiome analysis, large-scale studies on autism and chronic fatigue syndrome/myalgic encephalomyelitis with focus on understanding host response mechanisms using high-throughput protein arrays, RNA-Seq, proteomics and metabolomics platforms, and data integration of multi-omics platforms.
The candidate is expected to demonstrate the following skills and experience:
Advanced knowledge of commonly used bioinformatics tools and algorithms, writing pipelines for analysis of NGS datasets, generated using Illumina sequencing platform, along with strong programming and analytical skills. Thorough knowledge of NGS experimental design, data quality control, mapping software such as Bowtie and STAR, genome annotations from major bioinformatics resources (EMBL, NCBI). Count generation using featureCounts, normalization and downstream analysis with DESeq2. Experience with tools such as Salmon, Kallisto etc. would be considered a plus. High proficiency in scripting languages, such as Shell, Python, Perl and R in an academic or industrial environment. Ability to work in Linux environments consisting of high-performance clusters or Amazon Cloud. Familiarity with SGE or Slurm schedulers, resource management, multi-threading tools. Familiarity with Gene Set Enrichment Analysis or Ingenuity Pathway analysis
Responsibilities
Provide bioinformatics support for multi-omics analysis in a large and dynamic laboratory - 50% Provide support for projects related to microbial detection and discovery - 30% Manage databases and data - 10% Contribute to publications and research grants - 5% Perform other related duties as assigned - 5%
Minimum Qualifications
Bachelor's degree in computer science, bioinformatics, related field or equivalent in training and education with at least four (4) years of related experience.
Preferred Qualifications
Master’s degree or PhD degree in computer science, bioinformatics, or related field with at least 2 years of related experience. Knowledge of statistical and machine learning techniques is a plus.
Equal Opportunity Employer / Disability / Veteran
Columbia University is commited to the hiring of qualified local residents. Seniority level
Seniority level Mid-Senior level Employment type
Employment type Full-time Job function
Job function Research, Analyst, and Information Technology Industries Hospitals and Health Care Referrals increase your chances of interviewing at Columbia University Irving Medical Center by 2x Get notified about new Senior Biologist jobs in
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New York, NY $100,000.00-$120,000.00 6 months ago Computational Biologist, Advanced Single Cell Technologies Platform (Biohub NY)
New York, NY $108,000.00-$135,000.00 2 weeks ago New York, NY $100,000.00-$150,000.00 3 days ago New York, NY $78,000.00-$88,000.00 5 days ago New York, NY $50,000.00-$60,000.00 2 weeks ago New York, NY $63,962.00-$89,003.00 5 hours ago Edison, NJ $120,000.00-$128,000.00 2 weeks ago Research Associate - iPSC Culture (m/f/d) at BE Therapeutics in New York City
Associate Researcher I- Immunology and Immunotherapy
New York, NY $58,661.00-$74,609.83 2 weeks ago Preclinical Principal Scientist, Research & Development
Brooklyn, NY $140,000.00-$240,000.00 1 month ago If you do not see what you're looking for, please apply here!
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New York, NY $75,000.00-$225,000.00 2 months ago New York, NY $90,000.00-$150,000.00 2 months ago ML Research Scientist, Foundation Models (Senior / Staff / Principal)
Special Agent: STEM-Physical Sciences Background
New York City Metropolitan Area $99,461.00-$128,329.00 2 weeks ago New York, NY $55,652.00-$66,648.00 1 month ago Associate Scientist- Pharmacological Sciences
New York, NY $58,661.00-$110,000.00 2 months ago New York, NY $90,000.00-$100,000.00 3 weeks ago New York City Metropolitan Area 5 days ago Computational Biologist, Single Cell Genomics, Satija Lab
New York, NY $65,000.00-$85,000.00 3 weeks ago Pearl River, NY $90,900.00-$151,500.00 4 hours ago Research Assistant | Laboratory of Molecular Genetics and Immunology
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Research Assistant II (Dr Marro's Lab) - Neurosciences
We’re unlocking community knowledge in a new way. Experts add insights directly into each article, started with the help of AI.
#J-18808-Ljbffr