TechData Service Company LLC
PartTime Bioinformatics NGS Data Analyst Consultant LC 345761
TechData Service Company LLC, Cambridge, Massachusetts, us, 02140
Job Description
Job Description PT work: **Desired Start Date: 6/30/2025 End Date: 12/31/2025 ** Hrs/Wk:20.00 (negotiable) Work enviroment: Hybrid at Cambridge, MA POSITION SUMMARY: • The project focuses on the assay development of next-generation sequencing (NGS)-based viral detection. • The role will transform existing bash and Python analysis programs into efficient Nextflow workflows. • The successful candidate will have a proven track record in bioinformatics and Nextflow workflow development utilizing high-throughput sequencing data. • They are expected to be detail-oriented, capable of working independently, and able to collaborate with project management and collaborators. • Maintain detailed documentation of workflow processes and provide regular updates on project progress. POSITION RESPONSIBILITIES: • Develop and implement Nextflow workflows based on an existing analysis workflow to streamline our NGS-based viral detection processes. • Translate existing analysis programs, initially developed in bash and python, into modular Nextflow workflows. • Provide insights and recommendations for improvements in workflow design and tool utilization. • Demonstrate strong understanding of bioinformatics tools and their application to NGS data analysis. • Utilize tools, such as BLAST, STAR, Bowtie, samtools, and Python-based packages to optimize workflow performance and accuracy in the viral detection assay. • Maintain comprehensive documentation of workflows on GitHub for reproducibility. • Regular report on progress, challenges, and outcome to project management and collaborators. ORGANIZATIONAL RELATIONSHIPS: • Machine Learning and Computational Sciences (MLCS) group at Company • Biotherapeutic Pharmaceutical Sciences (BTx Pharm Sci) group at Company EDUCATION AND EXPERIENCE: • Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. • A Master’s degree or Ph.D. in a relevant discipline is preferred. • Hands-on experience in bioinformatics workflow development, particularly with Nextflow, is required. • Proven experience in programming using bash and Python in the context of NGS data analysis. • Experience with version control system, particularly GitHub, for documentation and collaboration purposes. TECHNICAL SKILLS REQUIREMENTS: • Proficiency in developing bioinformatics workflow using Nextflow, with a strong understanding of its syntax, modules, processes, and configurations. • Strong programming skills in Python. • In-depth knowledge of bioinformatics tools commonly used in NGS data analysis, including BLAST, STAR, Bowtie, samtools, etc. • Familiarity with high-performance computing environments (HPC) or cloud-based platforms. • Proficiency in using version control systems such as Git for code management and collaboration. Hard Skills: 1. Nextflow/Workflow scripting skills 2. Bioinformatics skill set 3. Python Soft skills: 1. Communication (written/verbal) Interview Process: Teams Bridge with HM Virtual/In-person (Panel) IT Technical not Clinical / Scientific 20/hrs per wk (negotiable) Company Description www.techdataservice.com Company Description
www.techdataservice.com
#J-18808-Ljbffr
Job Description PT work: **Desired Start Date: 6/30/2025 End Date: 12/31/2025 ** Hrs/Wk:20.00 (negotiable) Work enviroment: Hybrid at Cambridge, MA POSITION SUMMARY: • The project focuses on the assay development of next-generation sequencing (NGS)-based viral detection. • The role will transform existing bash and Python analysis programs into efficient Nextflow workflows. • The successful candidate will have a proven track record in bioinformatics and Nextflow workflow development utilizing high-throughput sequencing data. • They are expected to be detail-oriented, capable of working independently, and able to collaborate with project management and collaborators. • Maintain detailed documentation of workflow processes and provide regular updates on project progress. POSITION RESPONSIBILITIES: • Develop and implement Nextflow workflows based on an existing analysis workflow to streamline our NGS-based viral detection processes. • Translate existing analysis programs, initially developed in bash and python, into modular Nextflow workflows. • Provide insights and recommendations for improvements in workflow design and tool utilization. • Demonstrate strong understanding of bioinformatics tools and their application to NGS data analysis. • Utilize tools, such as BLAST, STAR, Bowtie, samtools, and Python-based packages to optimize workflow performance and accuracy in the viral detection assay. • Maintain comprehensive documentation of workflows on GitHub for reproducibility. • Regular report on progress, challenges, and outcome to project management and collaborators. ORGANIZATIONAL RELATIONSHIPS: • Machine Learning and Computational Sciences (MLCS) group at Company • Biotherapeutic Pharmaceutical Sciences (BTx Pharm Sci) group at Company EDUCATION AND EXPERIENCE: • Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. • A Master’s degree or Ph.D. in a relevant discipline is preferred. • Hands-on experience in bioinformatics workflow development, particularly with Nextflow, is required. • Proven experience in programming using bash and Python in the context of NGS data analysis. • Experience with version control system, particularly GitHub, for documentation and collaboration purposes. TECHNICAL SKILLS REQUIREMENTS: • Proficiency in developing bioinformatics workflow using Nextflow, with a strong understanding of its syntax, modules, processes, and configurations. • Strong programming skills in Python. • In-depth knowledge of bioinformatics tools commonly used in NGS data analysis, including BLAST, STAR, Bowtie, samtools, etc. • Familiarity with high-performance computing environments (HPC) or cloud-based platforms. • Proficiency in using version control systems such as Git for code management and collaboration. Hard Skills: 1. Nextflow/Workflow scripting skills 2. Bioinformatics skill set 3. Python Soft skills: 1. Communication (written/verbal) Interview Process: Teams Bridge with HM Virtual/In-person (Panel) IT Technical not Clinical / Scientific 20/hrs per wk (negotiable) Company Description www.techdataservice.com Company Description
www.techdataservice.com
#J-18808-Ljbffr