Stanford University School of Medicine
Computational Biologist & Project Manager in Genomics (Biostatistician 2)
Stanford University School of Medicine, Palo Alto, California, United States, 94306
Overview
The Engreitz and Kundaje Labs are seeking a Computational Biologist / Project Manager (Biostatistician 2) to join the Department of Genetics at Stanford University School of Medicine to map the regulatory wiring of the human genome and discover genetic mechanisms of disease. The position is open, and a successful candidate could join immediately. Lab overview: DNA regulatory elements in the human genome, which harbor thousands of genetic risk variants for common and rare diseases and could reveal targets for therapeutics that aim to precisely tune cellular functions — if only we could map the complex regulatory wiring that connects 2 million regulatory elements with 21,000 genes in thousands of cell types in the human body. The Engreitz and Kundaje Labs have developed new experimental approaches and computational methods that could enable mapping this regulatory wiring at massive scale (see Fulco et al. Nature Genetics 2019, Schnitzler & Kang et al. Nature 2024, Avsec et al. Nature Genetics 2021, Pampari et al. bioRxiv 2024). We invent new tools combining single-cell genomics, CRISPR perturbations, and machine learning to assemble regulatory maps of the human genome and uncover mechanisms of complex diseases. For more information and recent work, see https://www.engreitzlab.org and https://kundajelab.github.io/ Project overview
We aim to develop and apply computational models to interpret the function of any noncoding variant or protein-coding gene in the human genome, across many human cell types in the body. Toward this goal, we are leading highly collaborative projects in two NIH-funded Consortia: MorPhiC (https://morphic.bio) and IGVF (https://www.igvf.org). MorPhiC aims to characterize the functions of genes through CRISPR perturbations and predictive modeling (Adli et al. Nature 2025). IGVF aims to characterize the impact of genomic variation on function by combining single-cell mapping, genomic perturbations, and predictive models (IGVF Consortium, Nature 2024). This position will involve improving predictive models of variants, enhancers, and genes and applying them to large single-cell and CRISPR datasets generated by MorPhiC and IGVF to create a comprehensive catalog of the regulatory wiring of the genome. Who we are looking for
We are looking for creative and passionate people at any stage in their careers, including computational biologists, bioinformaticians and software engineers. Candidates will train to lead and design team science computational projects that push the boundaries of genomic technology and reveal the functions of genetic elements associated with human diseases. Working environment
Our laboratories are co-located in the Department of Genetics and Biomedical Innovations Building at Stanford University. Our department is a dynamic, interdisciplinary workplace that will provide unique access to cutting edge technologies and scientific thought, with the potential for widespread recognition of scientific contributions. We value a diversity of values, backgrounds, and approaches to solving problems. Qualifications
Required: M.S. or Ph.D. in computational biology, genetics, computer science, statistics, math, molecular biology, or related field, or equivalent practical experience. Talented applicants of all levels are encouraged to apply. Demonstrated expertise in statistical methods in data analysis, preferably with applications to high-throughput sequencing or other biological assays Experience with data analysis and management, workflow management Fluency in Unix, standard bioinformatics tools (Python, R, or equivalent), and a programming language (C/C++, Java) Strong knowledge of molecular biology and functional genomics Mentor and train other lab members in computational biology and statistics Excellent communication, organization, and time management skills Creative, organized, motivated, team player A passion for science and sense of urgency to find new medicines to benefit patients Education & Experience (required)
Master's degree in biostatistics, statistics or related field and at least 3 years of experience. Knowledge, Skills And Abilities (required)
Proficient in at least two of R, SAS, SPSS, or STATA. Skills in descriptive analysis, modeling of data, and graphic interfaces. Outstanding ability to communicate technical information to both technical and non-technical audiences. Demonstrated excellence in at least one area of expertise, which may include coordinating studies; statistical methodology such as missing data, survival analysis, statistical genetics, or informatics; statistical computing; database design (e.g., expertise in RedCAP or MySQL); graphical techniques (e.g., expertise in Illustrator). Certifications & Licenses
None Physical Requirements
Frequently perform desk based computer tasks, seated work and use light/ fine grasping. Occasionally stand, walk, and write by hand, lift, carry, push/pull objects that weigh up to 10 pounds. Working Conditions
May work extended or non-standard hours based on project or business cycle needs. The expected pay range for this position is $112,292 to $132,108 per annum. Stanford University provides pay ranges representing its good faith estimate of what the university reasonably expects to pay for a position. The pay offered to a selected candidate will be determined based on factors such as the scope and responsibilities of the position, the qualifications of the candidate, departmental budget availability, internal equity, geographic location and external market pay for comparable jobs. At Stanford University, base pay represents only one aspect of the comprehensive rewards package. The Cardinal at Work website (https://cardinalatwork.stanford.edu/benefits-rewards) provides detailed information on Stanford’s extensive range of benefits and rewards offered to employees. Specifics about the rewards package for this position may be discussed during the hiring process. The job duties listed are typical examples of work performed by positions in this job classification and are not designed to contain or be interpreted as a comprehensive inventory of all duties, tasks, and responsibilities. Specific duties and responsibilities may vary depending on department or program needs without changing the general nature and scope of the job or level of responsibility. Employees may also perform other duties as assigned. Work Standards
Interpersonal Skills: Demonstrates the ability to work well with Stanford colleagues and clients and with external organizations. Promote Culture of Safety: Demonstrates commitment to personal responsibility and value for safety; communicates safety concerns; uses and promotes safe behaviors based on training and lessons learned. Subject to and expected to comply with all applicable University policies and procedures, including but not limited to the personnel policies and other policies found in the University\'s Administrative Guide. Seniority level
Mid-Senior level Employment type
Full-time Job function
Research, Analyst, and Information Technology Industries
Higher Education Stanford is an equal employment opportunity and affirmative action employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, protected veteran status, or any other characteristic protected by law.
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The Engreitz and Kundaje Labs are seeking a Computational Biologist / Project Manager (Biostatistician 2) to join the Department of Genetics at Stanford University School of Medicine to map the regulatory wiring of the human genome and discover genetic mechanisms of disease. The position is open, and a successful candidate could join immediately. Lab overview: DNA regulatory elements in the human genome, which harbor thousands of genetic risk variants for common and rare diseases and could reveal targets for therapeutics that aim to precisely tune cellular functions — if only we could map the complex regulatory wiring that connects 2 million regulatory elements with 21,000 genes in thousands of cell types in the human body. The Engreitz and Kundaje Labs have developed new experimental approaches and computational methods that could enable mapping this regulatory wiring at massive scale (see Fulco et al. Nature Genetics 2019, Schnitzler & Kang et al. Nature 2024, Avsec et al. Nature Genetics 2021, Pampari et al. bioRxiv 2024). We invent new tools combining single-cell genomics, CRISPR perturbations, and machine learning to assemble regulatory maps of the human genome and uncover mechanisms of complex diseases. For more information and recent work, see https://www.engreitzlab.org and https://kundajelab.github.io/ Project overview
We aim to develop and apply computational models to interpret the function of any noncoding variant or protein-coding gene in the human genome, across many human cell types in the body. Toward this goal, we are leading highly collaborative projects in two NIH-funded Consortia: MorPhiC (https://morphic.bio) and IGVF (https://www.igvf.org). MorPhiC aims to characterize the functions of genes through CRISPR perturbations and predictive modeling (Adli et al. Nature 2025). IGVF aims to characterize the impact of genomic variation on function by combining single-cell mapping, genomic perturbations, and predictive models (IGVF Consortium, Nature 2024). This position will involve improving predictive models of variants, enhancers, and genes and applying them to large single-cell and CRISPR datasets generated by MorPhiC and IGVF to create a comprehensive catalog of the regulatory wiring of the genome. Who we are looking for
We are looking for creative and passionate people at any stage in their careers, including computational biologists, bioinformaticians and software engineers. Candidates will train to lead and design team science computational projects that push the boundaries of genomic technology and reveal the functions of genetic elements associated with human diseases. Working environment
Our laboratories are co-located in the Department of Genetics and Biomedical Innovations Building at Stanford University. Our department is a dynamic, interdisciplinary workplace that will provide unique access to cutting edge technologies and scientific thought, with the potential for widespread recognition of scientific contributions. We value a diversity of values, backgrounds, and approaches to solving problems. Qualifications
Required: M.S. or Ph.D. in computational biology, genetics, computer science, statistics, math, molecular biology, or related field, or equivalent practical experience. Talented applicants of all levels are encouraged to apply. Demonstrated expertise in statistical methods in data analysis, preferably with applications to high-throughput sequencing or other biological assays Experience with data analysis and management, workflow management Fluency in Unix, standard bioinformatics tools (Python, R, or equivalent), and a programming language (C/C++, Java) Strong knowledge of molecular biology and functional genomics Mentor and train other lab members in computational biology and statistics Excellent communication, organization, and time management skills Creative, organized, motivated, team player A passion for science and sense of urgency to find new medicines to benefit patients Education & Experience (required)
Master's degree in biostatistics, statistics or related field and at least 3 years of experience. Knowledge, Skills And Abilities (required)
Proficient in at least two of R, SAS, SPSS, or STATA. Skills in descriptive analysis, modeling of data, and graphic interfaces. Outstanding ability to communicate technical information to both technical and non-technical audiences. Demonstrated excellence in at least one area of expertise, which may include coordinating studies; statistical methodology such as missing data, survival analysis, statistical genetics, or informatics; statistical computing; database design (e.g., expertise in RedCAP or MySQL); graphical techniques (e.g., expertise in Illustrator). Certifications & Licenses
None Physical Requirements
Frequently perform desk based computer tasks, seated work and use light/ fine grasping. Occasionally stand, walk, and write by hand, lift, carry, push/pull objects that weigh up to 10 pounds. Working Conditions
May work extended or non-standard hours based on project or business cycle needs. The expected pay range for this position is $112,292 to $132,108 per annum. Stanford University provides pay ranges representing its good faith estimate of what the university reasonably expects to pay for a position. The pay offered to a selected candidate will be determined based on factors such as the scope and responsibilities of the position, the qualifications of the candidate, departmental budget availability, internal equity, geographic location and external market pay for comparable jobs. At Stanford University, base pay represents only one aspect of the comprehensive rewards package. The Cardinal at Work website (https://cardinalatwork.stanford.edu/benefits-rewards) provides detailed information on Stanford’s extensive range of benefits and rewards offered to employees. Specifics about the rewards package for this position may be discussed during the hiring process. The job duties listed are typical examples of work performed by positions in this job classification and are not designed to contain or be interpreted as a comprehensive inventory of all duties, tasks, and responsibilities. Specific duties and responsibilities may vary depending on department or program needs without changing the general nature and scope of the job or level of responsibility. Employees may also perform other duties as assigned. Work Standards
Interpersonal Skills: Demonstrates the ability to work well with Stanford colleagues and clients and with external organizations. Promote Culture of Safety: Demonstrates commitment to personal responsibility and value for safety; communicates safety concerns; uses and promotes safe behaviors based on training and lessons learned. Subject to and expected to comply with all applicable University policies and procedures, including but not limited to the personnel policies and other policies found in the University\'s Administrative Guide. Seniority level
Mid-Senior level Employment type
Full-time Job function
Research, Analyst, and Information Technology Industries
Higher Education Stanford is an equal employment opportunity and affirmative action employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, protected veteran status, or any other characteristic protected by law.
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